Transcript: lnc-FOXN3-1:2

Basic information

LNCipedia transcript ID: lnc-FOXN3-1:2 
LNCipedia gene ID: lnc-FOXN3-1
Ensembl Gene ID: ENSG00000259053
Ensembl Transcript ID: ENST00000555070
Location (hg38): chr14:89412312-89954659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 452 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555070.1; RP11-33N16.3-001; OTTHUMT00000411023.1; NONHSAT039185
Alternative gene names: ENSG00000259053.1; RP11-33N16.3; OTTHUMG00000170977.1; AL137230.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.9434 non-coding 
CPAT coding probability 27.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXN3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-944C7.1.1-1:1
4.0 lnc-RP11-944C7.1.1-1:1
4.1 lnc-RP11-944C7.1.1-1:1
5.0 lnc-RP11-944C7.1.1-1:1
5.1 lnc-GALC-29:2
5.2 lnc-FOXN3-1:2