Transcript: lnc-FOXO1-2:10

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:10 
HGNC Gene Symbol: lnc-FOXO1-2    
HGNC Full Gene Name: long intergenic non-protein coding RNA 598
Ensembl Gene ID: ENSG00000215483
Ensembl Transcript ID: ENST00000400430
Location (hg38): chr13:40450994-40481006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 702 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000400430; ENST00000400430.2; LINC00598-001; OTTHUMT00000044629.1; NONHSAT033334; ENST00000400430.6; ENST00000637326.1
Alternative gene names: ENSG00000215483; RP11-350A18.1; ENSG00000215483.4; LINC00598; OTTHUMG00000016772.1; ENSG00000215483.8; ENSG00000215483.9; ENSG00000215483.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.0972 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:10 yes no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO1-1:1
3.1 lnc-FOXO1-1:1
4.0 lnc-FOXO1-2:10
4.1 lnc-FOXO1-2:10
5.0 lnc-FOXO1-2:10
5.1 lnc-CCDC169-53:5
5.2 lnc-FOXO1-2:10