Transcript: lnc-FOXO1-2:28

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:28 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg38): chr13:40160702-40350475
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1612 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230058.1|FTMT24900021670.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.716 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:28 no no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FOXO1-2:28
5.0 lnc-FOXO1-2:28
5.1 lnc-CCDC169-53:24
5.2 lnc-FOXO1-2:28