Transcript: lnc-FOXO1-2:4

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:4 
HGNC Gene Symbol: lnc-FOXO1-2    
HGNC Full Gene Name: long intergenic non-protein coding RNA 598
Ensembl Gene ID: ENSG00000215483
Ensembl Transcript ID: ENST00000616706
RefSeq ID: NR_024505
Location (hg38): chr13:40450934-40481006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2088 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT033333; NR_024505; ENST00000616706.4; NR_024505.1
Alternative gene names: ENSG00000215483.8; LINC00598; ENSG00000215483.9; ENSG00000215483.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.0972 non-coding 
CPAT coding probability 31.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:4 yes no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXO1-2:4
4.0 lnc-FOXO1-2:4
4.1 lnc-FOXO1-2:4
5.0 lnc-FOXO1-2:4
5.1 lnc-CCDC169-53:8
5.2 lnc-FOXO1-2:4