Transcript: lnc-FOXQ1-16:2

Basic information

LNCipedia transcript ID: lnc-FOXQ1-16:2 
LNCipedia gene ID: lnc-FOXQ1-16
Location (hg38): chr6:1161128-1164736
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3609 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT106389
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.5278 non-coding 
CPAT coding probability 3.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXQ1-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL033381.1-6:2
4.0 lnc-AL033381.1-6:2
4.1 lnc-AL033381.1-6:2
5.0 lnc-AL033381.1-6:2
5.1 lnc-RIPK1-119:2
5.2 lnc-FOXQ1-16:2