Transcript: lnc-FPGT-5:2

Basic information

LNCipedia transcript ID: lnc-FPGT-5:2 
LNCipedia gene ID: lnc-FPGT-5
Location (hg38): chr1:72775271-72791280
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1331 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000227; ENST00000418078; ENST00000418078.1; RP11-262K1.1-001; OTTHUMT00000026183.1; NONHSAT003919
Alternative gene names: XLOC_000254; linc-FPGT-4; ENSG00000227016; RP11-262K1.1; ENSG00000227016.1; OTTHUMG00000009452.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.5402 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FPGT-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FPGT-4:2
3.1 lnc-FPGT-5:2
4.0 lnc-FPGT-5:2
4.1 lnc-FPGT-5:2
5.0 lnc-FPGT-5:2
5.1 lnc-TYW3-12:4
5.2 lnc-FPGT-5:2