Transcript: lnc-FRMD5-1:2

Basic information

LNCipedia transcript ID: lnc-FRMD5-1:2 
LNCipedia gene ID: lnc-FRMD5-1
Location (hg38): chr15:44288711-44289215
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 427 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560551.1; RP11-616K22.3-002; OTTHUMT00000415375.1; NONHSAT042142
Alternative gene names: ENSG00000259653.1; RP11-616K22.3; OTTHUMG00000171844.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRMD5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRMD5-1:2
4.0 lnc-FRMD5-1:2
4.1 lnc-FRMD5-1:2
5.0 lnc-FRMD5-1:2
5.1 lnc-SERINC4-8:2
5.2 lnc-FRMD5-1:2