Transcript: lnc-FSCB-1:3

Basic information

LNCipedia transcript ID: lnc-FSCB-1:3 
HGNC Gene Symbol: lnc-FSCB-1    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2277
Ensembl Gene ID: ENSG00000258487
Ensembl Transcript ID: ENST00000553386
Location (hg38): chr14:44466958-44480618
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553386; ENST00000553386.1; RP11-99L13.1-001; OTTHUMT00000410020.1; NONHSAT036610
Alternative gene names: ENSG00000258487; RP11-99L13.1; ENSG00000258487.1; OTTHUMG00000170687.1; LINC02277


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -281.0422 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSCB-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSCB-1:3
3.1 lnc-FSCB-1:3
4.0 lnc-FSCB-1:3
4.1 lnc-FSCB-1:3
5.0 lnc-FSCB-1:3
5.1 lnc-RTN1-160:11
5.2 lnc-FSCB-1:3