Transcript: lnc-FSCB-3:1

Basic information

LNCipedia transcript ID: lnc-FSCB-3:1 
LNCipedia gene ID: lnc-FSCB-3
Ensembl Gene ID: ENSG00000259149
Ensembl Transcript ID: ENST00000555362
Location (hg38): chr14:42259731-42268586
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555362; ENST00000555362.1; RP11-313C4.1-001; OTTHUMT00000410044.1; NONHSAT036585
Alternative gene names: ENSG00000259149; RP11-313C4.1; ENSG00000259149.1; OTTHUMG00000170695.1; AL445074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.2006 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSCB-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSCB-3:1
3.1 lnc-FSCB-3:1
4.0 lnc-FSCB-3:1
4.1 lnc-FSCB-3:1
5.0 lnc-FSCB-3:1
5.1 lnc-RTN1-168:1
5.2 lnc-FSCB-3:1