Transcript: lnc-FSCN1-2:1

Basic information

LNCipedia transcript ID: lnc-FSCN1-2:1 
LNCipedia gene ID: lnc-FSCN1-2
Ensembl Gene ID: ENSG00000230733
Ensembl Transcript ID: ENST00000444210
Location (hg38): chr7:5475804-5479811
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3251 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444210.2; AC092171.4-001; OTTHUMT00000324095.2; NONHSAT118918
Alternative gene names: ENSG00000230733.2; AC092171.4; OTTHUMG00000151833.2; AC092171.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.1217 non-coding 
CPAT coding probability 28.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSCN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSCN1-2:1
4.0 lnc-FSCN1-2:1
4.1 lnc-FSCN1-2:1
5.0 lnc-FSCN1-2:1
5.1 lnc-SLC29A4-6:1
5.2 lnc-FSCN1-2:1