Transcript: lnc-FSCN2-1:3

Basic information

LNCipedia transcript ID: lnc-FSCN2-1:3 
LNCipedia gene ID: lnc-FSCN2-1
Ensembl Gene ID: ENSG00000229848
Ensembl Transcript ID: ENST00000442532
Location (hg38): chr17:81519040-81527776
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 783 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025202; ENST00000442532.1; RP13-766D20.2-001; OTTHUMT00000343245.1; NONHSAT056515
Alternative gene names: XLOC_012338; linc-FSCN2-1; ENSG00000229848.1; RP13-766D20.2; OTTHUMG00000156171.1; AC139149.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.3402 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSCN2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSCN2-1:2
3.1 lnc-FSCN2-1:3
4.0 lnc-FSCN2-1:3
4.1 lnc-FSCN2-1:3
5.0 lnc-FSCN2-1:3
5.1 lnc-TSPAN10-12:8
5.2 lnc-FSCN2-1:3