Transcript: lnc-FSIP1-4:1

Basic information

LNCipedia transcript ID: lnc-FSIP1-4:1 
LNCipedia gene ID: lnc-FSIP1-4
Location (hg38): chr15:39513800-39519936
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024082; NONHSAT041759
Alternative gene names: XLOC_011437; linc-RASGRP1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -418.0733 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSIP1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSIP1-1:3
3.1 lnc-FSIP1-4:1
4.0 lnc-FSIP1-4:1
4.1 lnc-FSIP1-4:1
5.0 lnc-FSIP1-4:1
5.1 lnc-VPS39-60:4
5.2 lnc-FSIP1-4:1