Transcript: lnc-FSIP1-4:12

Basic information

LNCipedia transcript ID: lnc-FSIP1-4:12 
LNCipedia gene ID: lnc-FSIP1-4
Ensembl Gene ID: ENSG00000259345
Ensembl Transcript ID: ENST00000559318
Location (hg38): chr15:39299339-39420951
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559318.1; RP11-624L4.1-005; OTTHUMT00000418723.1; NONHSAT041736
Alternative gene names: ENSG00000259345.1; RP11-624L4.1; OTTHUMG00000172466.2; ENSG00000259345.5; AC013652.1; ENSG00000259345.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.3538 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 1 coding 
orfFrame7.2010254
covF1Prop0.14084507
seqAAMPRPASARTQCTHPLACIHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSGFGITCLNGKPM

In stringent set: no

Locus conservation

Locus conservation?
lnc-FSIP1-4:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSIP1-5:3
4.0 lnc-FSIP1-4:12
4.1 lnc-FSIP1-4:12
5.0 lnc-FSIP1-4:12
5.1 lnc-VPS39-60:12
5.2 lnc-FSIP1-4:12