Transcript: lnc-FSIP1-4:15

Basic information

LNCipedia transcript ID: lnc-FSIP1-4:15 
LNCipedia gene ID: lnc-FSIP1-4
Ensembl Gene ID: ENSG00000259345
Ensembl Transcript ID: ENST00000560197
Location (hg38): chr15:38865322-39118713
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1378 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560197.1; RP11-624L4.1-004; OTTHUMT00000418720.1; NONHSAT041725; ENST00000560197.5
Alternative gene names: ENSG00000259345.1; RP11-624L4.1; OTTHUMG00000172466.2; ENSG00000259345.5; AC013652.1; ENSG00000259345.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.9392 non-coding 
CPAT coding probability 24.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSIP1-4:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSIP1-5:6
4.0 lnc-FSIP1-4:15
4.1 lnc-FSIP1-4:15
5.0 lnc-FSIP1-4:15
5.1 lnc-VPS39-60:39
5.2 lnc-FSIP1-4:15