Transcript: lnc-FSIP1-4:5

Basic information

LNCipedia transcript ID: lnc-FSIP1-4:5 
LNCipedia gene ID: lnc-FSIP1-4
Location (hg38): chr15:39512406-39514125
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 350 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558818.1; RP11-27M9.1-001; OTTHUMT00000418641.2; NONHSAT041756
Alternative gene names: ENSG00000259390.1; RP11-27M9.1; OTTHUMG00000172455.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -417.611 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSIP1-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSIP1-4:5
4.0 lnc-FSIP1-4:5
4.1 lnc-FSIP1-4:5
5.0 lnc-FSIP1-4:5
5.1 lnc-VPS39-60:6
5.2 lnc-FSIP1-4:5