Transcript: lnc-FTMT-2:1

Basic information

LNCipedia transcript ID: lnc-FTMT-2:1 
LNCipedia gene ID: lnc-FTMT-2
RefSeq ID: NR_104999
Location (hg38): chr5:121322550-121325837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009498; ENST00000433406; ENST00000433406.2; CTC-546K23.1-001; OTTHUMT00000371113.2; NONHSAT103455; NR_104999; NR_104999.1
Alternative gene names: XLOC_004529; linc-FTMT-2; ENSG00000229855; CTC-546K23.1; ENSG00000229855.2; OTTHUMG00000162941.2; LOC102467226


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.6339 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FTMT-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FTMT-2:1
3.1 lnc-FTMT-2:1
4.0 lnc-FTMT-2:1
4.1 lnc-FTMT-2:1
5.0 lnc-FTMT-2:1
5.1 lnc-AP3S1-74:9
5.2 lnc-FTMT-2:1