Transcript: lnc-FUBP1-6:4

Basic information

LNCipedia transcript ID: lnc-FUBP1-6:4 
LNCipedia gene ID: lnc-FUBP1-6
Location (hg38): chr1:77741328-77741835
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 508 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr1_10354_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.8152 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FUBP1-6:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZZZ3-6:3
4.0 lnc-ZZZ3-6:3
4.1 lnc-ZZZ3-6:3
5.0 lnc-ZZZ3-6:3
5.1 lnc-FUBP1-7:3
5.2 lnc-FUBP1-6:4