Transcript: lnc-FXYD4-1:1

Basic information

LNCipedia transcript ID: lnc-FXYD4-1:1 
LNCipedia gene ID: lnc-FXYD4-1
Location (hg38): chr10:43323011-43327969
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1289 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018174; NONHSAT012950
Alternative gene names: XLOC_008466; linc-FXYD4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6811 non-coding 
CPAT coding probability 73.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FXYD4-1:1 no no no no

Available literature

  1. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  2. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FXYD4-1:1
3.1 lnc-FXYD4-1:1
4.0 lnc-FXYD4-1:1
4.1 lnc-FXYD4-1:1
5.0 lnc-FXYD4-1:1
5.1 lnc-NPY4R2-86:1
5.2 lnc-FXYD4-1:1