Transcript: lnc-FXYD4-1:2

Basic information

LNCipedia transcript ID: lnc-FXYD4-1:2 
LNCipedia gene ID: lnc-FXYD4-1
Ensembl Gene ID: ENSG00000224265
Ensembl Transcript ID: ENST00000451438
Location (hg38): chr10:43323665-43327932
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017818; ENST00000451438; ENST00000451438.1; RP11-168L22.2-001; OTTHUMT00000047697.1; NONHSAT012951
Alternative gene names: XLOC_008466; linc-FXYD4; ENSG00000224265; RP11-168L22.2; ENSG00000224265.1; OTTHUMG00000018026.1; AC068707.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.4796 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FXYD4-1:2 no no no no

Available literature

  1. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  2. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FXYD4-1:2
3.1 lnc-FXYD4-1:2
4.0 lnc-FXYD4-1:2
4.1 lnc-FXYD4-1:2
5.0 lnc-FXYD4-1:2
5.1 lnc-NPY4R2-86:3
5.2 lnc-FXYD4-1:2