Transcript: lnc-FXYD4-1:3

Basic information

LNCipedia transcript ID: lnc-FXYD4-1:3 
LNCipedia gene ID: lnc-FXYD4-1
Location (hg38): chr10:43323011-43326597
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 736 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT012949
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6811 non-coding 
CPAT coding probability 74.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FXYD4-1:3 no no no no

Available literature

  1. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  2. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FXYD4-1:3
4.0 lnc-FXYD4-1:3
4.1 lnc-FXYD4-1:3
5.0 lnc-FXYD4-1:3
5.1 lnc-NPY4R2-86:2
5.2 lnc-FXYD4-1:3