Transcript: lnc-FYTTD1-8:6

Basic information

LNCipedia transcript ID: lnc-FYTTD1-8:6 
LNCipedia gene ID: lnc-FYTTD1-8
Ensembl Gene ID: ENSG00000237167
Ensembl Transcript ID: ENST00000420213
Location (hg38): chr3:197458405-197467105
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005721; ENST00000420213; ENST00000420213.1; AC128709.2-001; OTTHUMT00000340292.1; NONHSAT094404
Alternative gene names: XLOC_003011; linc-FYTTD1-3; ENSG00000237167; AC128709.2; ENSG00000237167.1; OTTHUMG00000155482.1; AC128709.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.1496 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FYTTD1-8:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FYTTD1-1:1
3.1 lnc-FYTTD1-1:1
4.0 lnc-FYTTD1-1:1
4.1 lnc-FYTTD1-8:6
5.0 lnc-FYTTD1-8:6
5.1 lnc-FYTTD1-8:6
5.2 lnc-FYTTD1-8:6