Transcript: lnc-FZD3-1:2

Basic information

LNCipedia transcript ID: lnc-FZD3-1:2 
LNCipedia gene ID: lnc-FZD3-1
Ensembl Gene ID: ENSG00000253567
Ensembl Transcript ID: ENST00000518819
Location (hg38): chr8:28448954-28455902
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518819.1; RP11-181B11.2-002; OTTHUMT00000376332.1; NONHSAT125734
Alternative gene names: ENSG00000253567.1; RP11-181B11.2; OTTHUMG00000163906.1; AC025871.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.7814 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FZD3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FZD3-1:2
4.0 lnc-FZD3-1:2
4.1 lnc-FZD3-1:2
5.0 lnc-FZD3-1:2
5.1 lnc-WRN-62:2
5.2 lnc-FZD3-1:2