Transcript: lnc-FZD5-1:4

Basic information

LNCipedia transcript ID: lnc-FZD5-1:4 
LNCipedia gene ID: lnc-FZD5-1
Location (hg38): chr2:207821290-207822769
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1262 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000343987; ENST00000343987.2; AC096772.6-001; OTTHUMT00000337039.1; NONHSAT076624
Alternative gene names: ENSG00000244567; AC096772.6; ENSG00000244567.1; OTTHUMG00000154782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.0031 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FZD5-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLEKHM3-1:1
3.1 lnc-PLEKHM3-1:1
4.0 lnc-PLEKHM3-1:1
4.1 lnc-PLEKHM3-1:1
5.0 lnc-PLEKHM3-1:1
5.1 lnc-FN1-31:1
5.2 lnc-FZD5-1:4