Transcript: lnc-FZD8-1:1

Basic information

LNCipedia transcript ID: lnc-FZD8-1:1 
LNCipedia gene ID: lnc-FZD8-1
Ensembl Gene ID: ENSG00000227313
Ensembl Transcript ID: ENST00000442783
Location (hg38): chr10:35896874-35898963
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 868 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017953; ENST00000442783; ENST00000442783.1; RP11-309N24.1-001; OTTHUMT00000047578.1; NONHSAT012743
Alternative gene names: XLOC_008779; linc-FZD8-2; ENSG00000227313; RP11-309N24.1; ENSG00000227313.1; OTTHUMG00000017959.1; AL365500.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.6402 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FZD8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FZD8-1:1
3.1 lnc-FZD8-1:1
4.0 lnc-FZD8-1:1
4.1 lnc-FZD8-1:1
5.0 lnc-FZD8-1:1
5.1 lnc-CUL2-8:1
5.2 lnc-FZD8-1:1