Transcript: lnc-G2E3-2:1

Basic information

LNCipedia transcript ID: lnc-G2E3-2:1 
LNCipedia gene ID: lnc-G2E3-2
Ensembl Gene ID: ENSG00000257904
Ensembl Transcript ID: ENST00000553082
Location (hg38): chr14:29940745-29980212
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553082.1; RP11-269C4.2-001; OTTHUMT00000409379.1; NONHSAT036213
Alternative gene names: ENSG00000257904.1; RP11-269C4.2; OTTHUMG00000170490.1; AL133372.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.25 non-coding 
CPAT coding probability 5.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-G2E3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-G2E3-2:1
4.0 lnc-G2E3-2:1
4.1 lnc-G2E3-2:1
5.0 lnc-G2E3-2:1
5.1 lnc-G2E3-2:1
5.2 lnc-G2E3-2:1