Transcript: lnc-GABARAPL2-1:1

Basic information

LNCipedia transcript ID: lnc-GABARAPL2-1:1 
LNCipedia gene ID: lnc-GABARAPL2-1
Location (hg38): chr16:75473125-75495407
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2210 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000530512; NONHSAT143739
Alternative gene names: ENSG00000203472; AC009163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0039 non-coding 
CPAT coding probability 10.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABARAPL2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GABARAPL2-1:1
3.1 lnc-GABARAPL2-1:1
4.0 lnc-GABARAPL2-1:1
4.1 lnc-GABARAPL2-1:1
5.0 lnc-GABARAPL2-1:1
5.1 lnc-MARVELD3-70:1
5.2 lnc-GABARAPL2-1:1