Transcript: lnc-GABARAPL2-1:2

Basic information

LNCipedia transcript ID: lnc-GABARAPL2-1:2 
LNCipedia gene ID: lnc-GABARAPL2-1
Ensembl Gene ID: ENSG00000203472
Ensembl Transcript ID: ENST00000530512
Location (hg38): chr16:75475896-75495407
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530512.3; RP11-77K12.4-001; OTTHUMT00000435476.1; NONHSAT143741
Alternative gene names: ENSG00000203472.3; RP11-77K12.4; OTTHUMG00000177129.1; AC009163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7591 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABARAPL2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABARAPL2-1:2
4.0 lnc-GABARAPL2-1:2
4.1 lnc-GABARAPL2-1:2
5.0 lnc-GABARAPL2-1:2
5.1 lnc-MARVELD3-70:2
5.2 lnc-GABARAPL2-1:2