Transcript: lnc-GABARAPL2-9:1

Basic information

LNCipedia transcript ID: lnc-GABARAPL2-9:1 
LNCipedia gene ID: lnc-GABARAPL2-9
Ensembl Gene ID: ENSG00000274220
Ensembl Transcript ID: ENST00000621929
Location (hg38): chr16:75433836-75436392
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2557 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621929.1
Alternative gene names: ENSG00000274220.1; RP11-77K12.9; AC009163.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 105.5403 coding 
CPAT coding probability 99.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GABARAPL2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GABARAPL2-9:1
4.1 lnc-GABARAPL2-9:1
5.0 lnc-GABARAPL2-9:1
5.1 lnc-MARVELD3-69:1
5.2 lnc-GABARAPL2-9:1