Transcript: lnc-GABPA-13:2

Basic information

LNCipedia transcript ID: lnc-GABPA-13:2 
LNCipedia gene ID: lnc-GABPA-13
Ensembl Gene ID: ENSG00000273492
Ensembl Transcript ID: ENST00000609365
Location (hg38): chr21:26170916-26215941
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 559 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609365.1
Alternative gene names: ENSG00000273492.1; AP000230.1; ENSG00000273492.5; AP000229.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9058 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABPA-13:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABPA-13:2
4.0 lnc-GABPA-13:2
4.1 lnc-GABPA-13:2
5.0 lnc-GABPA-13:2
5.1 lnc-OLIG1-63:6
5.2 lnc-GABPA-13:2