Transcript: lnc-GABPA-1:1

Basic information

LNCipedia transcript ID: lnc-GABPA-1:1 
LNCipedia gene ID: lnc-GABPA-1
Location (hg38): chr21:25934298-25935270
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 430 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456904.1; AP001442.2-001; OTTHUMT00000171424.1; NONHSAT081518
Alternative gene names: ENSG00000233783.1; AP001442.2; OTTHUMG00000078483.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.6672 non-coding 
CPAT coding probability 2.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABPA-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABPA-1:1
4.0 lnc-GABPA-1:1
4.1 lnc-GABPA-1:1
5.0 lnc-GABPA-1:1
5.1 lnc-OLIG1-66:6
5.2 lnc-GABPA-1:1