Transcript: lnc-GABPA-1:7

Basic information

LNCipedia transcript ID: lnc-GABPA-1:7 
LNCipedia gene ID: lnc-GABPA-1
Ensembl Gene ID: ENSG00000233783
Ensembl Transcript ID: ENST00000596669
Location (hg38): chr21:25934341-25935178
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 838 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT081521; ENST00000596669.1
Alternative gene names: ENSG00000233783.3; AP001442.2; ENSG00000233783.7; AP001442.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.4833 non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABPA-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABPA-1:7
4.0 lnc-GABPA-1:7
4.1 lnc-GABPA-1:7
5.0 lnc-GABPA-1:7
5.1 lnc-OLIG1-66:9
5.2 lnc-GABPA-1:7