Transcript: lnc-GABPA-1:8

Basic information

LNCipedia transcript ID: lnc-GABPA-1:8 
LNCipedia gene ID: lnc-GABPA-1
Ensembl Gene ID: ENSG00000233783
Ensembl Transcript ID: ENST00000617755
Location (hg38): chr21:25928754-25935126
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 659 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617755.1
Alternative gene names: ENSG00000233783.7; AP001442.2; AP001442.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -128.7973 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABPA-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-GABPA-1:8
4.1 lnc-GABPA-1:8
5.0 lnc-GABPA-1:8
5.1 lnc-OLIG1-66:1
5.2 lnc-GABPA-1:8