Transcript: lnc-GABRB1-1:1

Basic information

LNCipedia transcript ID: lnc-GABRB1-1:1 
LNCipedia gene ID: lnc-GABRB1-1
Ensembl Gene ID: ENSG00000260918
Ensembl Transcript ID: ENST00000562284
Location (hg38): chr4:47431960-47438959
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7000 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562284.1; RP11-731J8.2-001; OTTHUMT00000431265.2; NONHSAT096249
Alternative gene names: ENSG00000260918.1; RP11-731J8.2; OTTHUMG00000175912.2; AC107398.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.7271 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABRB1-1:1 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABRB1-1:1
4.0 lnc-GABRB1-1:1
4.1 lnc-GABRB1-1:1
5.0 lnc-GABRB1-1:1
5.1 lnc-GABRB1-1:1
5.2 lnc-GABRB1-1:1