Transcript: lnc-GADD45A-9:2

Basic information

LNCipedia transcript ID: lnc-GADD45A-9:2 
LNCipedia gene ID: lnc-GADD45A-9
Location (hg38): chr1:67832303-68073754
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2089 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232284.3|MICT00000012864.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.0369 non-coding 
CPAT coding probability 13.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GADD45A-9:2 no no no no

Available literature

  1. Stojic (2016), Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions., Nat Commun
  2. Niemczyk (2013), Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GNG12-AS1:10
5.0 GNG12-AS1:10
5.1 lnc-CTH-30:2
5.2 lnc-GADD45A-9:2