Transcript: lnc-GADD45A-9:5

Basic information

LNCipedia transcript ID: lnc-GADD45A-9:5 
HGNC Gene Symbol: lnc-GADD45A-9    
HGNC Full Gene Name: GNG12 antisense RNA 1
Ensembl Gene ID: ENSG00000232284
Ensembl Transcript ID: ENST00000434072
Location (hg38): chr1:68138357-68141788
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 458 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434072; ENST00000434072.1; GNG12-AS1-004; OTTHUMT00000025357.1; NONHSAT003817
Alternative gene names: ENSG00000232284; RP11-518D3.1; ENSG00000232284.2; GNG12-AS1; OTTHUMG00000009150.1; ENSG00000232284.3; ENSG00000232284.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.2935 non-coding 
CPAT coding probability 12.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GADD45A-9:5 yes no no no

Available literature

  1. Stojic (2016), Transcriptional silencing of long noncoding RNA GNG12-AS1 uncouples its transcriptional and product-related functions., Nat Commun
  2. Niemczyk (2013), Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GADD45A-1:6
3.1 lnc-GADD45A-1:6
4.0 GNG12-AS1:7
4.1 GNG12-AS1:7
5.0 GNG12-AS1:7
5.1 lnc-CTH-30:5
5.2 lnc-GADD45A-9:5