Transcript: lnc-GADD45G-5:3

Basic information

LNCipedia transcript ID: lnc-GADD45G-5:3 
LNCipedia gene ID: lnc-GADD45G-5
Ensembl Gene ID: ENSG00000237626
Ensembl Transcript ID: ENST00000446201
Location (hg38): chr9:89978282-89987486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 457 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015707; ENST00000446201; ENST00000446201.1; RP11-406A20.1-001; OTTHUMT00000053004.1; NONHSAT147689
Alternative gene names: XLOC_007451; linc-SYK-2; ENSG00000237626; RP11-406A20.1; ENSG00000237626.1; OTTHUMG00000020189.1; AL161629.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.6092 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GADD45G-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GADD45G-5:3
3.1 lnc-GADD45G-5:3
4.0 lnc-GADD45G-5:3
4.1 lnc-GADD45G-5:3
5.0 lnc-GADD45G-5:3
5.1 lnc-SECISBP2-14:5
5.2 lnc-GADD45G-5:3