Transcript: lnc-GADD45GIP1-2:1

Basic information

LNCipedia transcript ID: lnc-GADD45GIP1-2:1 
LNCipedia gene ID: lnc-GADD45GIP1-2
Ensembl Gene ID: ENSG00000267417
Ensembl Transcript ID: ENST00000586630
Location (hg38): chr19:13013662-13014511
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 523 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT061321; ENST00000586630.1
Alternative gene names: ENSG00000267417.1; CTC-239J10.1; AC138474.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1218.6486 non-coding 
CPAT coding probability 10.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GADD45GIP1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GADD45GIP1-2:1
4.0 lnc-GADD45GIP1-2:1
4.1 lnc-GADD45GIP1-2:1
5.0 lnc-GADD45GIP1-2:1
5.1 lnc-ZNF443-24:1
5.2 lnc-GADD45GIP1-2:1