Transcript: lnc-GAL3ST3-2:1

Basic information

LNCipedia transcript ID: lnc-GAL3ST3-2:1 
LNCipedia gene ID: lnc-GAL3ST3-2
Ensembl Gene ID: ENSG00000255038
Ensembl Transcript ID: ENST00000529036
Location (hg38): chr11:66067277-66069619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 502 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529036.1
Alternative gene names: ENSG00000255038.1; RP11-1167A19.2; AP006287.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -84.217 non-coding 
CPAT coding probability 7.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAL3ST3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-1167A19.2.1-2:1
4.1 lnc-RP11-1167A19.2.1-2:1
5.0 lnc-RP11-1167A19.2.1-2:1
5.1 lnc-LTBP3-45:1
5.2 lnc-GAL3ST3-2:1