Transcript: lnc-GALC-3:2

Basic information

LNCipedia transcript ID: lnc-GALC-3:2 
LNCipedia gene ID: lnc-GALC-3
Ensembl Gene ID: ENSG00000258807
Ensembl Transcript ID: ENST00000554519
Location (hg38): chr14:87736402-87816251
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 813 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554519; ENST00000554519.1; RP11-1152H15.1-003; OTTHUMT00000410108.1; NONHSAT038162
Alternative gene names: ENSG00000258807; RP11-1152H15.1; ENSG00000258807.1; OTTHUMG00000170725.1; ENSG00000258807.5; AL359237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.6076 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALC-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALC-3:2
3.1 lnc-GALC-3:2
4.0 lnc-GALC-3:2
4.1 lnc-GALC-3:2
5.0 lnc-GALC-3:2
5.1 lnc-GALC-3:2
5.2 lnc-GALC-3:2