Transcript: lnc-GALC-9:1

Basic information

LNCipedia transcript ID: lnc-GALC-9:1 
LNCipedia gene ID: lnc-GALC-9
Ensembl Gene ID: ENSG00000258902
Ensembl Transcript ID: ENST00000557547
Location (hg38): chr14:85362457-85516934
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557547; ENST00000557547.1; CTD-2128A3.2-001; OTTHUMT00000413187.1; NONHSAT038111
Alternative gene names: ENSG00000258902; CTD-2128A3.2; ENSG00000258902.1; OTTHUMG00000171367.1; AL049775.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.5204 non-coding 
CPAT coding probability 13.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALC-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALC-8:1
3.1 lnc-GALC-9:1
4.0 lnc-GALC-9:1
4.1 lnc-GALC-9:1
5.0 lnc-GALC-9:1
5.1 lnc-GALC-35:1
5.2 lnc-GALC-9:1