Transcript: lnc-GALM-1:1

Basic information

LNCipedia transcript ID: lnc-GALM-1:1 
LNCipedia gene ID: lnc-GALM-1
Ensembl Gene ID: ENSG00000235586
Ensembl Transcript ID: ENST00000457097
Location (hg38): chr2:38601598-38602178
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 233 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457097.1; AC011247.3-001; OTTHUMT00000331178.1; NONHSAT070193
Alternative gene names: ENSG00000235586.1; AC011247.3; OTTHUMG00000153432.1; AC011247.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.6695 non-coding 
CPAT coding probability 30.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALM-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALM-1:1
4.0 lnc-GALM-1:1
4.1 lnc-GALM-1:1
5.0 lnc-GALM-1:1
5.1 lnc-RASGRP3-44:1
5.2 lnc-GALM-1:1