Transcript: lnc-GALNT15-6:1

Basic information

LNCipedia transcript ID: lnc-GALNT15-6:1 
LNCipedia gene ID: lnc-GALNT15-6
Ensembl Gene ID: ENSG00000272498
Ensembl Transcript ID: ENST00000607363
Location (hg38): chr3:16339308-16339871
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 564 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607363.1
Alternative gene names: ENSG00000272498.1; RP11-415F23.3; AC090948.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.2806 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALNT15-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OXNAD1-4:1
4.0 lnc-OXNAD1-4:1
4.1 lnc-OXNAD1-4:1
5.0 lnc-OXNAD1-4:1
5.1 lnc-MKRN2-54:1
5.2 lnc-GALNT15-6:1