Transcript: lnc-GALNT6-1:1

Basic information

LNCipedia transcript ID: lnc-GALNT6-1:1 
LNCipedia gene ID: lnc-GALNT6-1
Ensembl Gene ID: ENSG00000271065
Ensembl Transcript ID: ENST00000604939
Location (hg38): chr12:51421956-51424611
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 347 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028263; ENST00000604939.1
Alternative gene names: ENSG00000271065.1; RP11-607P23.1; AC107031.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.3962 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALNT6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALNT6-1:1
4.0 lnc-GALNT6-1:1
4.1 lnc-GALNT6-1:1
5.0 lnc-GALNT6-1:1
5.1 lnc-GALNT6-1:1
5.2 lnc-GALNT6-1:1