Transcript: lnc-GALR1-2:1

Basic information

LNCipedia transcript ID: lnc-GALR1-2:1 
LNCipedia gene ID: lnc-GALR1-2
Ensembl Gene ID: ENSG00000265844
Ensembl Transcript ID: ENST00000584843
Location (hg38): chr18:77180106-77235430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 560 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584843.1; RP11-751H17.1-001; OTTHUMT00000445809.1; NONHSAT059983
Alternative gene names: ENSG00000265844.1; RP11-751H17.1; OTTHUMG00000179337.1; AC100863.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3246 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALR1-2:1
4.0 lnc-GALR1-2:1
4.1 lnc-GALR1-2:1
5.0 lnc-GALR1-2:1
5.1 lnc-KCNG2-25:1
5.2 lnc-GALR1-2:1