Transcript: lnc-GALR1-3:1

Basic information

LNCipedia transcript ID: lnc-GALR1-3:1 
LNCipedia gene ID: lnc-GALR1-3
Ensembl Gene ID: ENSG00000264015
Ensembl Transcript ID: ENST00000583629
Location (hg38): chr18:77421619-77560763
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583629.1; RP11-176N18.2-001; OTTHUMT00000445811.1; NONHSAT059987
Alternative gene names: ENSG00000264015.1; RP11-176N18.2; OTTHUMG00000179338.1; AC124254.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.0006 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 1 coding 
seqAAMPRPASARAGCAHPLTCAHCLALPSEMNPVPQMEMQKSTIFCVAHAGSCRPELFLFGHLGSFLILIQFLNGSTQK
covF1Prop0.109589041
orfFrame6.729247681

In stringent set: no

Locus conservation

Locus conservation?
lnc-GALR1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALR1-3:1
4.0 lnc-GALR1-3:1
4.1 lnc-GALR1-3:1
5.0 lnc-GALR1-3:1
5.1 lnc-KCNG2-22:1
5.2 lnc-GALR1-3:1