Transcript: lnc-GAMT-1:3

Basic information

LNCipedia transcript ID: lnc-GAMT-1:3 
LNCipedia gene ID: lnc-GAMT-1
Ensembl Gene ID: ENSG00000248015
Ensembl Transcript ID: ENST00000589734
Location (hg38): chr19:1393578-1394878
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 574 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000589734.1
Alternative gene names: ENSG00000248015.2; AC005329.7; ENSG00000248015.6; AC005329.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.249 non-coding 
CPAT coding probability 6.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAMT-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAMT-1:3
4.0 lnc-GAMT-1:3
4.1 lnc-GAMT-1:3
5.0 lnc-GAMT-1:3
5.1 lnc-ZNF77-104:3
5.2 lnc-GAMT-1:3