Transcript: lnc-GAMT-2:1

Basic information

LNCipedia transcript ID: lnc-GAMT-2:1 
LNCipedia gene ID: lnc-GAMT-2
Location (hg38): chr19:1385159-1389651
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1758 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000382445.4; AC005329.6-001; OTTHUMT00000398000.1; NONHSAT060295
Alternative gene names: ENSG00000176936.2; AC005329.6; OTTHUMG00000168078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.8023 non-coding 
CPAT coding probability 20.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAMT-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAMT-2:1
4.0 lnc-GAMT-2:1
4.1 lnc-GAMT-2:1
5.0 lnc-GAMT-2:1
5.1 lnc-ZNF77-105:1
5.2 lnc-GAMT-2:1