Transcript: lnc-GAMT-2:5

Basic information

LNCipedia transcript ID: lnc-GAMT-2:5 
LNCipedia gene ID: lnc-GAMT-2
Location (hg38): chr19:1386225-1386649
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 425 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_BG205703_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.4242 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAMT-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAMT-2:5
4.0 lnc-GAMT-2:5
4.1 lnc-GAMT-2:5
5.0 lnc-GAMT-2:5
5.1 lnc-ZNF77-105:6
5.2 lnc-GAMT-2:5