Transcript: lnc-GAN-1:2

Basic information

LNCipedia transcript ID: lnc-GAN-1:2 
LNCipedia gene ID: lnc-GAN-1
Ensembl Gene ID: ENSG00000272923
Ensembl Transcript ID: ENST00000563750
Location (hg38): chr16:81385463-81387560
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 754 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563750.1; MIR4720-002; OTTHUMT00000432302.1; NONHSAT143947
Alternative gene names: ENSG00000261609.1; MIR4720; OTTHUMG00000176271.2; ENSG00000272923.1; RP11-391L3.1; AC092139.2; AC092139.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.7304 non-coding 
CPAT coding probability 7.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAN-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAN-1:2
4.0 lnc-GAN-1:2
4.1 lnc-GAN-1:2
5.0 lnc-GAN-1:2
5.1 lnc-CRISPLD2-67:3
5.2 lnc-GAN-1:2