Transcript: lnc-GAPDH-1:1

Basic information

LNCipedia transcript ID: lnc-GAPDH-1:1 
LNCipedia gene ID: lnc-GAPDH-1
Ensembl Gene ID: ENSG00000245667
Ensembl Transcript ID: ENST00000499202
Location (hg38): chr12:6543504-6544931
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499202.2; RP5-940J5.8-001; OTTHUMT00000402608.1; NONHSAT026110
Alternative gene names: ENSG00000245667.2; RP5-940J5.8; OTTHUMG00000169162.1; AC006064.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.8137 non-coding 
CPAT coding probability 3.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAPDH-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAPDH-1:1
4.0 lnc-GAPDH-1:1
4.1 lnc-GAPDH-1:1
5.0 lnc-GAPDH-1:1
5.1 lnc-CLEC4D-60:1
5.2 lnc-GAPDH-1:1